| Setup | Download files required for the lesson | |
| 14:00 | 1. Introduction |
What is metagenomics
What do we call viral dark matter |
| 14:10 | 2. The dataset |
Where does the dataset come from?
What format is the sequencing data? |
| 14:30 | 3. Cross-assembly |
What is a sequence assembly?
How is different a cross-assembly from a normal assembly? |
| 15:05 | 4. Mapping | What does a read aligning to a scaffold indicate? |
| 15:50 | 5. Abundance profiles | How does the number of reads aligned relate to the abundance of the scaffold? |
| 16:20 | 6. Profiles correlation | How does including more samples affect the binning step? |
| 16:45 | 7. Re-assembly | |
| 17:15 | Finish |
The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.